Index

A

activate() (segmenteverygrain.ClusterMontageLabeler method) (segmenteverygrain.ClusterMontageSelector method), [1] (segmenteverygrain.GrainPlot method)

C

calculate_iou() (in module segmenteverygrain) classify_points() (in module segmenteverygrain) clear_all() (segmenteverygrain.GrainPlot method) clear_box() (segmenteverygrain.GrainPlot method) clear_grains() (segmenteverygrain.GrainPlot method) clear_info() (segmenteverygrain.GrainPlot method) clear_points() (segmenteverygrain.GrainPlot method) click_for_scale() (in module segmenteverygrain) cluster_grains() (in module segmenteverygrain) ClusterMontageLabeler (class in segmenteverygrain) ClusterMontageSelector (class in segmenteverygrain)

collect_polygon_from_mask() (in module segmenteverygrain) compute_curvature() (in module segmenteverygrain) convert_to_large_image_coords() (in module segmenteverygrain) convert_units() (segmenteverygrain.Grain method) create_and_train_model() (in module segmenteverygrain) create_clustered_grain_montage() (in module segmenteverygrain) create_grain() (segmenteverygrain.GrainPlot method) create_grain_panel() (in module segmenteverygrain) create_grain_panel_cluster() (in module segmenteverygrain) create_labeled_image() (in module segmenteverygrain) create_train_val_test_data() (in module segmenteverygrain)

D

deactivate() (segmenteverygrain.ClusterMontageLabeler method) (segmenteverygrain.ClusterMontageSelector method), [1] (segmenteverygrain.GrainPlot method) delete_grains() (segmenteverygrain.GrainPlot method)

display_montage() (segmenteverygrain.ClusterMontageSelector method) draw_axes() (segmenteverygrain.Grain method) (segmenteverygrain.GrainPlot method) draw_patch() (segmenteverygrain.Grain method) draw_scale_line() (segmenteverygrain.GrainPlot method)

E

erase() (segmenteverygrain.Grain method) export_labels() (segmenteverygrain.ClusterMontageLabeler method) extract_all_grains() (in module segmenteverygrain)

extract_color_features() (in module segmenteverygrain) extract_grain_image() (in module segmenteverygrain) extract_patch() (in module segmenteverygrain) extract_vgg16_features() (in module segmenteverygrain)

F

find_connected_components() (in module segmenteverygrain)

find_grain_size_classes() (in module segmenteverygrain) find_overlapping_polygons() (in module segmenteverygrain)

G

get_area_weighted_distribution() (in module segmenteverygrain) get_filtered_grains() (segmenteverygrain.ClusterMontageSelector method), [1] get_filtered_images() (segmenteverygrain.ClusterMontageSelector method), [1] get_filtered_indices() (segmenteverygrain.ClusterMontageLabeler method) (segmenteverygrain.ClusterMontageSelector method), [1] get_filtered_labels() (segmenteverygrain.ClusterMontageSelector method), [1]

get_grains() (segmenteverygrain.GrainPlot method) get_grains_from_patches() (in module segmenteverygrain) get_labeled_data() (segmenteverygrain.ClusterMontageLabeler method) get_summary() (in module segmenteverygrain) get_unlabeled_indices() (segmenteverygrain.ClusterMontageLabeler method) Grain (class in segmenteverygrain) GrainPlot (class in segmenteverygrain)

H

hide_grains() (segmenteverygrain.GrainPlot method)

L

label_grains() (in module segmenteverygrain)

load_and_preprocess() (in module segmenteverygrain) load_image() (in module segmenteverygrain)

M

make_square() (in module segmenteverygrain) measure() (segmenteverygrain.Grain method)

merge_grains() (segmenteverygrain.GrainPlot method) merge_overlapping_polygons() (in module segmenteverygrain)

O

onclick() (in module segmenteverygrain) (segmenteverygrain.ClusterMontageLabeler method) (segmenteverygrain.ClusterMontageSelector method) (segmenteverygrain.GrainPlot method) onclick2() (in module segmenteverygrain) onclick_large_image() (in module segmenteverygrain) onclickup() (segmenteverygrain.GrainPlot method) ondraw() (segmenteverygrain.ClusterMontageLabeler method) (segmenteverygrain.GrainPlot method)

one_point_prompt() (in module segmenteverygrain) onkey() (segmenteverygrain.ClusterMontageLabeler method) (segmenteverygrain.ClusterMontageSelector method) (segmenteverygrain.GrainPlot method) onkeyup() (segmenteverygrain.GrainPlot method) onmotion() (segmenteverygrain.GrainPlot method) onpick() (segmenteverygrain.GrainPlot method) onpress() (in module segmenteverygrain) onpress2() (in module segmenteverygrain)

P

patchify_training_data() (in module segmenteverygrain) pick_most_similar_polygon() (in module segmenteverygrain) plot_classified_grains() (in module segmenteverygrain) plot_grain_axes_and_centroids() (in module segmenteverygrain) plot_histogram_of_axis_lengths() (in module segmenteverygrain) plot_image_w_colorful_grains() (in module segmenteverygrain)

plot_images_and_labels() (in module segmenteverygrain) polygon (segmenteverygrain.Grain property) polygons_to_grains() (in module segmenteverygrain) predict_image() (in module segmenteverygrain) predict_image_tile() (in module segmenteverygrain) predict_large_image() (in module segmenteverygrain)

R

rasterize_grains() (in module segmenteverygrain)

read_polygons() (in module segmenteverygrain)

S

sam_segmentation() (in module segmenteverygrain) save_grains() (in module segmenteverygrain) save_histogram() (in module segmenteverygrain) save_labeled_images() (segmenteverygrain.ClusterMontageLabeler method) save_mask() (in module segmenteverygrain) save_polygons() (in module segmenteverygrain)

save_summary() (in module segmenteverygrain) savefig() (segmenteverygrain.GrainPlot method) select() (segmenteverygrain.Grain method) selected_clusters (segmenteverygrain.ClusterMontageSelector attribute) selected_grain_indices (segmenteverygrain.ClusterMontageSelector attribute) set_point() (segmenteverygrain.GrainPlot method)

T

toggle_box() (segmenteverygrain.GrainPlot method)

two_point_prompt() (in module segmenteverygrain)

U

undo_grain() (segmenteverygrain.GrainPlot method) Unet() (in module segmenteverygrain)

update() (segmenteverygrain.ClusterMontageLabeler method) (segmenteverygrain.GrainPlot method) update_info() (segmenteverygrain.GrainPlot method)

W

weighted_crossentropy() (in module segmenteverygrain)